This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.
This section provides information on the tertiary and secondary structure of a protein.
This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.
This subsection of the Family and Domains section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.
Information which has been generated by the UniProtKB automatic annotation system, without manual validation.Measuring the amount of cytochrome c leaking from mitochondria to cytosol, and out of the cell to culture medium, is a sensitive method to monitor the degree of apoptosis. Cytochrome C is a freely moving protein that shuttles electrons to complex IV, known as cytochrome oxidase. The theoretical number of cytochrome c molecules bound to the ultrathin multilayer films having three or five monolayers was calculated as N = 1.2 x … Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)),
In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.
This subsection of the 'Sequence' section is used for sequence fragments to indicate that the residue at the extremity of the sequence is not the actual terminal residue in the complete protein sequence.
This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (UniRef).
This section is used to point to information related to entries and found in data collections other than UniProtKB.
This section provides general information on the entry.
This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. CYCS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different) Genomic Neighborhood • Exon Structure • Gene Density. The mitochondrial cytochrome- c oxidase is Y-shaped; the arms of the Y cross the inner membrane, the stalk protrudes into the intermembrane space. Cytochrome C, the initial “substrate” of this complex, delivers electrons from its heme cofactor to a dinuclear copper cluster, CuA. 1967 May 16;139(1):171-3 -. Automatic assertion inferred from combination of experimental and computational evidencei. have the same checksum value, the likelihood that this would happen 2012 Sep 15;525(2):145-60. doi: 10.1016/j.abb.2012.04.014. Author information: (1)Department of Preclinical Veterinary Sciences, University of Edinburgh, U.K. Epub 2012 May 16. Complex III is present in the mitochondria of all animals … 2012 Mar-Apr;3(2):93-103. doi: 10.4161/gmic.19578. 1983 Dec 12;164(2):223-6
This subsection of the Names and taxonomy section provides information on the name(s) of the organism that is the source of the protein sequence.
This subsection of the Names and taxonomy section shows the unique identifier assigned by the NCBI to the source organism of the protein. Electron carrier protein. Functions and absorption spectroscopy. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.
This section provides any useful information about the protein, mostly biological knowledge.
Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.
Automatic assertion inferred from signature matchi, The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms, Gene3D Structural and Functional Annotation of Protein Families, Integrated resource of protein families, domains and functional sites, Protein Motif fingerprint database; a protein domain database, Superfamily database of structural and functional annotation, PROSITE; a protein domain and family database. It has been … The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase.
This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.
This subsection of the Names and taxonomy section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.
This subsection of the Names and taxonomy section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. It should be … Cyclic redundancy and other checksums
The ETC is a series of four protein complexes: NADH dehydrogenase, succinate dehydrogenase, cytochrome bc 1, and cytochrome c oxidase, embedded in the inner membrane of the mitochondria. 44-46 This enzyme is always found associated with a membrane: the inner mitochondrial membrane in higher organisms or the cell membrane in bacteria. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.
A UniProt proteome can consist of several components.
The component name refers to the genomic component encoding a set of proteins.
This section provides information on the location and the topology of the mature protein in the cell.
This section provides information on the disease(s) and phenotype(s) associated with a protein.
This section describes post-translational modifications (PTMs) and/or processing events.
This subsection of the PTM/processing section describes post-translational modifications (PTMs). The 1.94 A resolution three-dimensional structure of oxidized horse heart cytochrome c has been elucidated and refined to a final R-factor of 0.17. Cytochrome c, or cyt c (horse heart: PDB 1HRC) is a small heme protein found loosely associated with the inner membrane of the mitochondrion.It is a soluble protein, unlike other cytochromes, and is an essential component of the electron transfer chain, where it carries one electron.It is capable of undergoing oxidation and reduction, but does not bind oxygen.It transfers electrons between … This has allowed for a detailed assessment of the structural features of this protein, including the presence of secondary structure, hydrogen-bonding patterns and heme geometry. Location: 1 → 103 Cyc7; Cytochrome c2 [Energy production and conversion] RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120. 1983 Feb 28;743(1):23-30 ... (the rest have rest have been removed using Pymol). Protein sets from fully sequenced genomes. Coverage-dependent changes of cytochrome c transverse location in phospholipid membranes revealed by FRET . 1984 Dec 17;768(3-4):293-317. doi: 10.1016/0304-4173(84)90020-x. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Alternative name(s): Holocytochrome-c synthase. You are using a version of browser that may not display all the features of this website. Get the latest public health information from CDC: https://www.coronavirus.gov, Get the latest research information from NIH: https://www.nih.gov/coronavirus, Find NCBI SARS-CoV-2 literature, sequence, and clinical content: https://www.ncbi.nlm.nih.gov/sars-cov-2/. The coenzyme Q: cytochrome c – oxidoreductase, sometimes called the cytochrome bc1 complex, and at other times complex III, is the third complex in the electron transport chain, playing a critical role in biochemical generation of ATP. an experiment that has been published in the scientific literature, an orthologous protein, a record from another database, etc.It receives an electron from each of four cytochrome c molecules, and transfers them to one dioxygen molecule, converting the molecular … Cytochrome c (550, T. novellus) is rather similar to the mammalian-type cytochrome c in spite of its bacterial origin (Yamanaka, 1972a, b). The locations of cytochrome c peroxidase and catalase activities in the two Gram-negative bacteria Pseudomonas stutzeri (N.C.I.B. The algorithm is described in the ISO 3309 standard. Mutations in MT-CO1 have been associated with Leber's hereditary optic neuropathy (LHON), acquired … 1997 Jul 1;36(26):7958-66. doi: 10.1021/bi963131e. …
The checksum is a form of redundancy check that is calculated The cellular location of cytochromes depends on their function.  In other eukaryotes, the gene is called COX1, CO1, or COI. Gene names i: Name:CYC3. Goodhew CF(1), Wilson IB, Hunter DJ, Pettigrew GW. Cytochrome c oxidase I (COX1) also known as mitochondrially encoded cytochrome c oxidase I (MT-CO1) is a protein that in humans is encoded by the MT-CO1 gene. Hemoproteins are proteins linked to a nonprotein, iron-bearing component.Ca2+ and the bacterial peroxidases: the cytochrome c peroxidase from Pseudomonas stutzeri. with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018. While intermediates may be formed within the active site of cytochrome c oxidase, none of these escape under normal conditions. Biochim Biophys Acta. By Yegor A. Domanov, Julian G. Molotkovsky and Galyna P. Gorbenko. Cytochrome, any of a group of hemoprotein cell components that, by readily undergoing reduction and oxidation (gain and loss of electrons) with the aid of enzymes, serve a vital function in the transfer of energy within cells.
It should be noted that while, in theory, two different sequences could 1984 Jun 1;141(2):305-12 It contains cytochromes A and A3.length and molecular weight. Epub 2002 Jul 13. Systems used to automatically annotate proteins with high accuracy: Select one of the options below to target your search: Select item(s) and click on "Add to basket" to create your own collection here (400 entries max),
Information which has been generated by the UniProtKB automatic annotation system, without manual validation.The enzyme cytochrome c oxidase or Complex IV, EC 220.127.116.11, is a large transmembrane protein complex found in bacteria, archaea, and the mitochondria of eukaryotes. Epub 2012 Mar 1. Although its isoelectric point exists at pH 7.5, it has thirteen lysine residues in one molecule and reacts fairly rapidly with cow cytochrome oxidase but rather slowly with P. aeruginosa nitrite reductase. COVID-19 is an emerging, rapidly evolving situation. Cytochrome c is a water-soluble electron carrier and exists between the internal and external mitochondrial membranes. 4. 1977;46:299-329. doi: 10.1146/annurev.bi.46.070177.001503. A comprehensive analysis of the structural differences between horse …
Information which has been generated by the UniProtKB automatic annotation system, without manual validation.The cellular location and specificity of bacterial cytochrome c peroxidases. The iron in cytochromes usually exists in a ferrous (Fe ) and a ferric (Fe ) state with a ferroxo (Fe ) state found in catalytic intermediates. NLM It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Epub 2012 Jan 24. J Biol Inorg Chem. 2012 Feb 7;51(5):974-85. doi: 10.1021/bi201135s. From there electrons flow to an adjacent heme a (low spin) which transfers them to another heme a3 (high spin) and then finally to dioxygen which is coordinated to the Fe in heme a3 and to an adjacent CuB. Bacterial proteins with CO-binding b- or c-type haem. Structural characterization of Paracoccus denitrificans cytochrome c peroxidase and assignment of the low and high potential heme sites. | -, Biochim Biophys Acta. The locations of cytochrome c peroxidase and catalase activities in the two Gram-negative bacteria Pseudomonas stutzeri (N.C.I.B. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.
This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). -, Biochem J. Gene sequences are partially known in several eukaryote species. Please enable it to take advantage of the complete set of features! Resonance energy transfer between lipid-bound fluorescent probe 3-methoxybenzanthrone as a donor and heme group of cytochrome c as an acceptor has been examined to ascertain the protein disposition relative to the surface of model membranes composed of phosphatidylcholine and cardiolipin (10, 50 and 80 mol%). USA.gov. 9721) and Paracoccus denitrificans (N.C.I.B.
The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64)
This subsection of the Names and taxonomy section contains the taxonomic hierarchical classification lineage of the source organism. 9721) and Paracoccus denitrificans (N.C.I.B. Biochemistry. The cytochrome c peroxidase of Paracoccus denitrificans. Rizzolo K, Cohen SE, Weitz AC, López Muñoz MM, Hendrich MP, Drennan CL, Elliott SJ. Automatic assertion according to rulesi,
Information which has been imported from another database using automatic procedures.Why do bacteria use so many enzymes to scavenge hydrogen peroxide? The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochromes are, thus, capable of performing electron transfer reactions and catalysis by reduction or oxidation of their heme iron.
When browsing through different UniProt proteins, you can use the 'basket' to save them, so that you can back to find or analyse them later.
This indicates the type of evidence that supports the existence of the protein.
This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.
This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. BibTex; Full citation Abstract. using the generator polynomial: x64 + x4 + x3 + x + 1. Analysis of the activation mechanism of Pseudomonas stutzeri cytochrome c peroxidase through an electron transfer chain. The location of cytochrome c on the surface of ultrathin lipid multilayer films using x-ray diffraction. Cytochrome c oxidase I is the main subunit of the cytochrome c oxidase complex. Metal centers are only located in subunits I and II.
The Gene Ontology (GO) project provides a set of hierarchical controlled vocabulary split into 3 categories:
UniProtKB Keywords constitute a controlled vocabulary with a hierarchical structure. Biochemistry. Electron carrier protein. Ordered Locus Names: ... Subcellular location i. Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by … Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain (By similarity).By similarity The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Help pages, FAQs, UniProtKB manual, documents, news archive and Biocuration projects. Would you like email updates of new search results? Epub 2011 May 6. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.
This subsection of the 'Entry information' section provides one or more accession number(s). The locations of cytochrome c peroxidase and catalase activities in the two Gram-negative bacteria Pseudomonas stutzeri (N.C.I.B. … Cite . Clipboard, Search History, and several other advanced features are temporarily unavailable. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. The transfer of electrons from cytochrome c to cytochrome oxidase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.UniRule annotation GO - Molecular function i Cytochrome c heme lyase (EC: 18.104.22.168) Short name: CCHL. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.
Information which has been imported from another database using automatic procedures.Cytochrome c is primarily known as an electron-carrying mitochondrial protein. The mitochondrial protein horse heart cytochrome c was specifically spin-labeled with succinimidyl-2,2,5,5-tetramethyl-3-pyrroline-1-oxyl-carboxylate on different lysine residues at positions 86, 87, 72, 8, or 25, respectively. Cytochrome c is widely believed to be localized solely in the mitochondrial intermembrane space under normal physiological conditions. This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All, DNA Data Bank of Japan; a nucleotide sequence database, Ensembl eukaryotic genome annotation project, Antibodypedia a portal for validated antibodies, ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data, ProtoNet; Automatic hierarchical classification of proteins, MobiDB: a database of protein disorder and mobility annotations,
Information inferred from a combination of experimental and computational evidence, without manual validation.1991 May 23;1058(1):25-7. doi: 10.1016/s0005-2728(05)80261-0. The bacterial enzyme has a simpler, elongated shape. | of multiple genes (paralogs). Purification of the Pa. denitrificans cytochrome c peroxidase showed it to be the haem c-containing polypeptide of Mr 42,000 that has already been described by Bosma, Braster, Stouthamer & Van Versefeld [(1987) Eur. The version number for both the entry and the canonical sequence are also displayed.
This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (reviewed) or to the computer-annotated TrEMBL section (unreviewed).
This section contains any relevant information that doesn't fit in any other defined sections
Information inferred from a combination of experimental and computational evidence, without manual validation.The theoretical number of cytochrome c molecules bound to the ultrathin multilayer films having three or five monolayers was calculated as N = 1.2 x 10(13)/cm2 (assuming a hexagonally close-packed monolayer of protein), which would produce … 9721) and Paracoccus denitrificans (N.C.I.B. As electrons are transferred through these protein complexes, a proton (H +) gradient accumulates in the intermembrane space of the mitochondria. In other eukaryotes, the gene is called COX1, CO1, or COI. 2011 Aug;16(6):881-8. doi: 10.1007/s00775-011-0785-8. Please consider upgrading,
An evidence describes the source of an annotation, e.g. is extremely low.8944) were investigated by the production of spheroplasts. These are stable identifiers and should be used to cite UniProtKB entries. The information is filed in different subsections. stutzeri and 98% of nonmembrane-bound activity in Pa. denitrificans were found in this cellular compartment. The energy production system selects a heme iron group to bind the oxygen along with the other copper atom and is the location of oxygen reduction (Figure 5).3 The function of magnesium and zinc remains unknown. Biochim Biophys Acta. 4e- + 8H + + O 2 → 4e- + 4H + + 2H 2 O. The mitochondrial protein horse heart cytochrome c was specifically spin-labeled with succinimidyl-2,2,5, 5-tetramethyl-3-pyrroline-1-oxyl-carboxylate on different lysine residues at positions 86, 87, 72, 8, or 25, respectively. Timóteo CG, Tavares P, Goodhew CF, Duarte LC, Jumel K, Gírio FM, Harding S, Pettigrew GW, Moura I. J Biol Inorg Chem. They can be found as globular proteins and membrane proteins Gut Microbes. Electron carrier protein. Location of a cytochrome c binding site on the surface of flavocytochrome b 2 Short, Duncan M.; Walkinshaw, Malcolm D.; Taylor, Paul; Reid, Graeme A.; Chapman, S. K. 1998-06-23 00:00:00 JBIC (1998) 3 : 246–252 Q SBIC 1998 ORIGINAL ARTICLE Duncan M. Short 7 Malcolm D. Walkinshaw Paul Taylor 7 Graeme A. Reid 7 Stephen K. Chapman Location of a cytochrome c binding site on the surface of …